Welcome to WebMeV

WebMeV (Multiple Experiment Viewer) is a cloud-based application supporting analysis, visualization, and stratification of large genomic data, particularly for RNA-Seq and microarray data.

Past versions of WebMeV were limited to analyses with relatively small memory and computational resources. In this updated version, we incorporate a number of technologies that will allow large-scale processing of raw sequencing data, greatly expanding the capabilities of an interactive, browser-based analysis tool.

With WebMeV platform, you can:

Perform integrative, reproducible NGS analysis, including clustering, differential expression, and functional analysis. Much of the analyses focus on using transcriptome/RNA-Seq data, but the platform is not limited to this application. We continue to update and add new analyses, so check back frequently.

Access to Public Domain Data - Directly search and create TCGA, TARGET, and GTEx gene expression and sample attribute data

Stratify Cohorts using Clinical Attributes - Perform complex cohort stratification using familiar search and filtering capabilities.

WebMeV was built to meet the challenge of exploring large public genomic data set and Next-Generation Sequencing data with intuitive graphical interface for analysis. WebMeV is a free and open-source cloud service platform. All analyses are version-controlled and made available through our GitHub repository. This enables transparent and reproducible analysis that can be run on any computational infrastructure, independent of the WebMeV platform.

Where to start - Our quickstart guide is available here: WebMeV Quickstart.

Tutorials and Documentation - Full documentation and an RNA-Seq case study is available at the WebMeV User Guide

Customized Analysis - Complex bioinformatics and data science analysis outside the scope of WebMeV functionalities can contact the Quantitative Biomedical Research Center (qBRC) at the Harvard T.H. Chan School of Public Health to inquire about consulting services. Click here for more information.